XGB - The Xanthomonas Genome Browser - Gene list

Title

+ Xanthomonas axonopodis pv. citri str. 306, 306

+ Xanthomonas campestris pv. campestris str. 8004, 8004

+ Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913

+ Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10

+ Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

+ Xylella fastidiosa 9a5c

+ Xylella fastidiosa Temecula1, Temecula1

+ Xylella fastidiosa, ATTC 35868

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

Gene list

Applied filters:

COG category: Extracellular structures

Number of genes found: 11

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Xanthomonas axonopodis pv. citri str. 306, 306

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
XAC0036		conserved hypothetical protein	chromosome	CDS	45728	345	-	0.669565
xadA		outer membrane protein	chromosome	CDS	4191829	6573	-	0.690704

Xanthomonas campestris pv. campestris str. 8004, 8004
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	XC_3576	outer membrane protein	chromosome	CDS	4243595	7056	-	0.686366

Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
xadA		outer membrane protein	chromosome	CDS	789898	7056	+	0.686366

Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	XCV3407	putative secreted protein	chromosome	CDS	3895392	1032	+	0.531008
xadA1	XCV3670	Xanthomonas adhesin XadA	chromosome	CDS	4226603	7074	-	0.687588
xadA2	XCV3672	Xanthomonas adhesin XadA	chromosome	CDS	4236201	3198	-	0.679487

Xanthomonas oryzae pv. oryzae KACC10331, KACC10331
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
xadA	XOO0842	outer membrane protein	chromosome	CDS	862259	3798	+	0.672196

Xylella fastidiosa 9a5c
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	XF1529	surface protein	chromosome	CDS	1481230	6180	+	0.538997
NA	XF1516	surface-exposed outer membrane protein	chromosome	CDS	1466282	3015	+	0.530017

Xylella fastidiosa Temecula1, Temecula1
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
xadA	PD_0731	outer membrane protein XadA	chromosome	CDS	896422	2994	+	0.53173